2/2/2024 0 Comments Cellprofiler analyst error 13In this section, we will build a CellProfiler pipeline from scratch in Galaxy. Rename galaxy-pencil the file to drosophila_embryo.zip.Open the Galaxy Upload Manager ( galaxy-upload on the top-right of the tool panel) It is recommended to build a CellProfiler pipeline using the Galaxy interface if the pipeline is to be run by Galaxy. Metadata extraction from file names is limited to a set of fixed patterns.Input and output file locations are set by Galaxy and can’t be set by the user.Parameters require manual input from the user whereas, in the stand-alone version, some modules can inherit parameter values from other modules. Parameters for some CellProfiler modules are limited/constrained compared to the stand-alone version, most notably:.Modules used by the pipeline aren’t available in Galaxy.The Galaxy tool currently uses CellProfiler 3.9.
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